2022

Joy S. Xiang, Jasmine R. Mueller, En-Ching Luo, Brian A. Yee, Danielle Schafer, Jonathan C. Schmok, Frederick E. Tan, Katherine Rothamel, Rachael N. McVicar, Elizabeth M. Kwong, Krysten L. Jones, Hsuan-Lin Her, Chun-Yuan Chen, Anthony Q. Vu, Wenhao Jin, Samuel S. Park, Phuong Le, Kristopher W. Brannan, Eric R. Kofman, Yanhua Li, Alexandra T. Tankka, Kevin D. Dong, Yan Song, Aaron F. Carlin, Eric L. Van Nostrand, Sandra L. Leibel, Gene W. Yeo “Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions” bioRxiv and Nature Structural & Molecular Biology (in review) 2022.02.21.481223; doi: https://doi.org/10.1101/2022.02.21.481223

2021

Kristopher Brannan, Isaac Chaim, Ryan Marina, Brian Yee, Eric Kofman, Daniel Lorenz, Pratibha Jagannatha, Kevin Dong, Assael Madrigal, Jason Underwood, Gene Yeo “Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes” Nature Methods (2021) https://doi.org/10.1038/s41592-021-01128-0

2020

Ryan Marina, Kristopher Brannan (co-first), Kevin Dong, Brian Yee, Gene W. Yeo “Evaluation of RNA-targeting CRISPR/Cas systems for site-specific A-to-I RNA editing” Cell Reports (2020) doi:10.1016/j.celrep.2020.108350

2019

Michael Cortazar, Ryan Sheridan, Benjamin Erickson, Nova Fong, Kira Glover-Cutter, Kristopher Brannan, David L Bentley “Control of RNA pol II speed by PNUTS-PP1 and Spt5 dephosphorylation facilitates termination by a “sitting duck torpedo” mechanism” Molecular Cell (2019) doi:10.1016/j.molcel.2019.09.031

2016

Kristopher Brannan, Gene W. Yeo “From a Protein-RNA Predictions toward a Peptide-RNA code” Molecular Cell (2016). doi:10.1016/j.molcel.2016.10.023

Kristopher Brannan, Wenhao Jin, Stephanie C. Huelga, Charles A.S. Banks, Joshua M. Gilmore, Laurence Florens, Michael P. Washburn, Eric L. Van Nostrand, Gabriel A. Pratt, Marie K. Schwinn, Danette L. Daniels, and Gene W. Yeo ”SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes” Molecular Cell. (2016);64(2):282-293. doi: 10.1016/j.molcel.2016.09.003.

2015

Nova Fong, Kristopher Brannan, Benjamin Erickson, Hyunmin Kim, Michael A. Cortazar, Ryan M. Sheridan, Tram Nguyen, Shai Karp, and David L. Bentley “Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition” Molecular Cell (2015) doi:10.1016/j.molcel.2015.09.026

2012

Kris Brannan, David L Bentley “Control of Transcriptional Elongation by RNA Polymerase II: A Retrospective.” Genetics        research international (2012) doi:10.1155/2012/170173

Kris Brannan, Hyunmin Kim, Benjamin Erickson, Kira Glover-Cutter, Soojin Kim, Nova Fong, Lauren Kiemele, Kirk Hansen, Richard Davis, Jens Lykke-Andersen, David L Bentley “mRNA Decapping Factors and the Exonuclease Xrn2 Function in Widespread Premature Termination of RNA Polymerase II Transcription.” Molecular Cell (2012) doi:10.1016/j.molcel.2012.03.006